The evaluation of marine functional zoning implementation is an important tool to supervise the implementation effect of marine functional zoning and improve the planning management system. However, the lack of effective and stable mechanism for implementation evaluation makes it difficult for marine functional zoning to fully play its guiding role in China. Therefore, based on the concept of consistency and planning blue print, a method is put forward to judge the coordination between the current situation of marine utilization and the marine functional zoning from three aspects: the conformity of marine use, the conformity of environmental quality standards, and the influence of utilization and then constructs coordination index of marine functional zoning, in order to build scientific and operable marine functional zoning implementation evaluation method, and Wenzhou is taken as an empirical case. The results show that the evaluation method based on consistency concept and marine function zoning blue print can effectively measure the implementation effect of marine function zoning. The implementation effect of Wenzhou Marine Function Zoning after revision has been significantly improved, which suggests the revision is conducive to promoting marine function zoning to better meet the social and economic development needs of the planned region. The evaluation method can lay the foundation for the compilation of territorial space planning and provide a reference for the evaluation of territorial space planning.